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A
 AcyclicEdgeDistance  Class in org.cicirello.permutations.distance

Acyclic Edge Distance:
 AcyclicEdgeDistance()  Constructor for class org.cicirello.permutations.distance.AcyclicEdgeDistance

Constructs the distance measurer as specified in the class documentation.
 arrayMask(int)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, double)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, double, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, double, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, int)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length and specified number of true values, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, int, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length and specified number of true values, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, int, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length and specified number of true values, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length, where an "array mask" is an array of boolean values of the same length as another array.
 arrayMask(int, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates an "array mask" of a specified length, where an "array mask" is an array of boolean values of the same length as another array.
B
 BlockInterchangeDistance  Class in org.cicirello.permutations.distance

Block Interchange Distance:
 BlockInterchangeDistance()  Constructor for class org.cicirello.permutations.distance.BlockInterchangeDistance

Constructs the distance measurer as specified in the class documentation.
C
 compute()  Method in class org.cicirello.math.la.JacobiDiagonalization

Computes the eigenvalues and eigenvectors using Jacobi Iteration.
 compute(double)  Method in class org.cicirello.math.la.JacobiDiagonalization

Computes the eigenvalues and eigenvectors using Jacobi Iteration.
 compute(double, int)  Method in class org.cicirello.math.la.JacobiDiagonalization

Computes the eigenvalues and eigenvectors using Jacobi Iteration.
 compute(int)  Method in class org.cicirello.math.la.JacobiDiagonalization

Computes the eigenvalues and eigenvectors using Jacobi Iteration.
 copy()  Method in class org.cicirello.permutations.Permutation
 copy()  Method in interface org.cicirello.util.Copyable

Creates an identical copy of this object.
 Copyable<T extends Copyable<T>>  Interface in org.cicirello.util

A simple interface for objects that can be copied.
 correlation(double[], double[])  Static method in class org.cicirello.math.stats.Statistics

Computes correlation coefficient for a pair of random variables.
 correlation(int[], int[])  Static method in class org.cicirello.math.stats.Statistics

Computes correlation coefficient for a pair of random variables.
 correlationMatrix(double[][])  Static method in class org.cicirello.math.stats.Statistics

Computes correlation matrix.
 correlationMatrix(int[][])  Static method in class org.cicirello.math.stats.Statistics

Computes correlation matrix.
 covariance(double[], double[])  Static method in class org.cicirello.math.stats.Statistics

Computes covariance for a pair of random variables.
 covariance(int[], int[])  Static method in class org.cicirello.math.stats.Statistics

Computes covariance for a pair of random variables.
 cycle(int[])  Method in class org.cicirello.permutations.Permutation

Creates a permutation cycle from a sequence of permutation indexes.
 CyclicEdgeDistance  Class in org.cicirello.permutations.distance

Cyclic Edge Distance:
 CyclicEdgeDistance()  Constructor for class org.cicirello.permutations.distance.CyclicEdgeDistance

Constructs the distance measurer as specified in the class documentation.
 CyclicIndependentDistance  Class in org.cicirello.permutations.distance

This class implements the concept of a cyclic independent distance measure.
 CyclicIndependentDistance(PermutationDistanceMeasurer)  Constructor for class org.cicirello.permutations.distance.CyclicIndependentDistance

Constructs a distance measure for measuring distance with cyclic independence, such that distance = min_{i in [0,N)} distance(p1,rotate(p2,i))
 CyclicIndependentDistanceDouble  Class in org.cicirello.permutations.distance

This class implements the concept of a cyclic independent distance measure.
 CyclicIndependentDistanceDouble(PermutationDistanceMeasurerDouble)  Constructor for class org.cicirello.permutations.distance.CyclicIndependentDistanceDouble

Constructs a distance measure for measuring distance with cyclic independence, such that distance = min_{i in [0,N)} distance(p1,rotate(p2,i))
 CyclicReversalIndependentDistance  Class in org.cicirello.permutations.distance

This class implements the combination of cyclic independence and reversal independence.
 CyclicReversalIndependentDistance(PermutationDistanceMeasurer)  Constructor for class org.cicirello.permutations.distance.CyclicReversalIndependentDistance

Constructs a distance measure for measuring distance with cyclic and reversal independence, such that distance = min_{i in [0,N)} { distance(p1,rotate(p2,i)), distance(p1,rotate(reverse(p2),i)) }
 CyclicReversalIndependentDistanceDouble  Class in org.cicirello.permutations.distance

This class implements the combination of cyclic independence and reversal independence.
 CyclicReversalIndependentDistanceDouble(PermutationDistanceMeasurerDouble)  Constructor for class org.cicirello.permutations.distance.CyclicReversalIndependentDistanceDouble

Constructs a distance measure for measuring distance with cyclic and reversal independence, such that distance = min_{i in [0,N)} { distance(p1,rotate(p2,i)), distance(p1,rotate(reverse(p2),i)) }
 CyclicRTypeDistance  Class in org.cicirello.permutations.distance

Cyclic RType Distance:
 CyclicRTypeDistance()  Constructor for class org.cicirello.permutations.distance.CyclicRTypeDistance

Constructs the distance measurer as specified in the class documentation.
D
 DeviationDistance  Class in org.cicirello.permutations.distance

Deviation Distance:
 DeviationDistance()  Constructor for class org.cicirello.permutations.distance.DeviationDistance

Constructs the distance measurer as specified in the class documentation.
 DeviationDistanceNormalized  Class in org.cicirello.permutations.distance

Normalized Deviation Distance:
 DeviationDistanceNormalized()  Constructor for class org.cicirello.permutations.distance.DeviationDistanceNormalized

Constructs the distance measurer as specified in the class documentation.
 DeviationDistanceNormalized2005  Class in org.cicirello.permutations.distance

Normalized Deviation Distance:
 DeviationDistanceNormalized2005()  Constructor for class org.cicirello.permutations.distance.DeviationDistanceNormalized2005

Constructs the distance measurer as specified in the class documentation.
 difference(double[][], double[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A  B.
 difference(double[][], double[][], double[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A  B.
 difference(int[][], int[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A  B.
 difference(int[][], int[][], int[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A  B.
 distance(boolean[], boolean[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(boolean[], boolean[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(boolean[], boolean[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(boolean[], boolean[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(byte[], byte[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(byte[], byte[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(byte[], byte[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(byte[], byte[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(char[], char[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(char[], char[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(char[], char[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(char[], char[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(double[], double[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(double[], double[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(double[], double[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(double[], double[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(float[], float[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(float[], float[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(float[], float[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(float[], float[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(int[], int[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(int[], int[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(int[], int[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(int[], int[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(long[], long[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(long[], long[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(long[], long[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(long[], long[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(short[], short[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays.
 distance(short[], short[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(short[], short[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays.
 distance(short[], short[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays.
 distance(Object[], Object[])  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two arrays of objects.
 distance(Object[], Object[])  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(Object[], Object[])  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two arrays of objects.
 distance(Object[], Object[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two arrays of objects.
 distance(String, String)  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two Strings.
 distance(String, String)  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(String, String)  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two Strings.
 distance(String, String)  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two Strings.
 distance(List<T>, List<T>)  Method in class org.cicirello.sequences.distance.EditDistance

Measures the distance between two lists of objects.
 distance(List<T>, List<T>)  Method in class org.cicirello.sequences.distance.ExactMatchDistance
 distance(List<T>, List<T>)  Method in class org.cicirello.sequences.distance.KendallTauSequenceDistance

Measures the distance between two lists of objects.
 distance(List<T>, List<T>)  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer

Measures the distance between two lists of objects.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.AcyclicEdgeDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.BlockInterchangeDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.CyclicEdgeDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.CyclicIndependentDistance

Measures the distance between two permutations, with cyclic independence: distance = min_{i in [0,N)} distance(p1,rotate(p2,i))
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.CyclicReversalIndependentDistance

Measures the distance between two permutations, with cyclic and reversal independence: distance = min_{i in [0,N)} { distance(p1,rotate(p2,i)), distance(p1,rotate(reverse(p2),i)) }
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.CyclicRTypeDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.DeviationDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.ExactMatchDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.InterchangeDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.KendallTauDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.LeeDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in interface org.cicirello.permutations.distance.PermutationDistanceMeasurer

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.ReinsertionDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.ReversalDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.ReversalIndependentDistance

Measures the distance between two permutations, with reversal independence: distance = min { distance(p1,p2), distance(p1,reverse(p2)) }
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.RTypeDistance

Measures the distance between two permutations.
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.ScrambleDistance
 distance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.SquaredDeviationDistance

Measures the distance between two permutations.
 distancef(boolean[], boolean[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(boolean[], boolean[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(boolean[], boolean[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(byte[], byte[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(byte[], byte[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(byte[], byte[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(char[], char[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(char[], char[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(char[], char[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(double[], double[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(double[], double[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(double[], double[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(float[], float[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(float[], float[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(float[], float[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(int[], int[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(int[], int[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(int[], int[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(long[], long[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(long[], long[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(long[], long[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(short[], short[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(short[], short[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(short[], short[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays.
 distancef(Object[], Object[])  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(Object[], Object[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(Object[], Object[])  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two arrays of objects.
 distancef(String, String)  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(String, String)  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(String, String)  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two Strings.
 distancef(List<T>, List<T>)  Method in class org.cicirello.sequences.distance.EditDistance
 distancef(List<T>, List<T>)  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurer
 distancef(List<T>, List<T>)  Method in interface org.cicirello.sequences.distance.SequenceDistanceMeasurerDouble

Measures the distance between two lists of objects.
 distancef(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.CyclicIndependentDistanceDouble

Measures the distance between two permutations, with cyclic independence: distance = min_{i in [0,N)} distance(p1,rotate(p2,i))
 distancef(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.CyclicReversalIndependentDistanceDouble

Measures the distance between two permutations, with cyclic and reversal independence: distance = min_{i in [0,N)} { distance(p1,rotate(p2,i)), distance(p1,rotate(reverse(p2),i)) }
 distancef(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.DeviationDistanceNormalized

Measures the distance between two permutations
 distancef(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.DeviationDistanceNormalized2005

Measures the distance between two permutations
 distancef(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.EditDistance

Measures the distance between two permutations.
 distancef(Permutation, Permutation)  Method in interface org.cicirello.permutations.distance.PermutationDistanceMeasurer

Measures the distance between two permutations
 distancef(Permutation, Permutation)  Method in interface org.cicirello.permutations.distance.PermutationDistanceMeasurerDouble

Measures the distance between two permutations
 distancef(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.ReversalIndependentDistanceDouble

Measures the distance between two permutations, with reversal independence: distance = min { distance(p1,p2), distance(p1,reverse(p2)) }
E
 EditDistance  Class in org.cicirello.permutations.distance

Edit Distance:
 EditDistance  Class in org.cicirello.sequences.distance

EditDistance is an implementation of Wagner and Fischer's dynamic programming algorithm for computing string edit distance.
 EditDistance()  Constructor for class org.cicirello.permutations.distance.EditDistance

Default edit distance computes number of remove and reinsert operations to transform one permutation into the other.
 EditDistance(double, double, double)  Constructor for class org.cicirello.permutations.distance.EditDistance

Constructs an EditDistance function.
 EditDistance(double, double, double)  Constructor for class org.cicirello.sequences.distance.EditDistance

Constructs an edit distance measure with the specified edit operation costs.
 EditDistance(int, int, int)  Constructor for class org.cicirello.sequences.distance.EditDistance

Constructs an edit distance measure with the specified edit operation costs.
 eigenvalues()  Method in class org.cicirello.math.la.JacobiDiagonalization

Gets the computed eigenvalues.
 eigenvectors()  Method in class org.cicirello.math.la.JacobiDiagonalization

Gets the computed eigenvectors.
 EPSILON  Static variable in class org.cicirello.math.la.JacobiDiagonalization

Default precision level for convergence check.
 equals(Object)  Method in class org.cicirello.permutations.Permutation

Equality test: Two permutations are equal if they are of the same length and contain the same elements in the same order.
 ExactMatchDistance  Class in org.cicirello.permutations.distance

Exact Match Distance:
 ExactMatchDistance  Class in org.cicirello.sequences.distance

ExactMatch distance (or Hamming Distance) of a pair of nonbinary strings (or more generally sequences) is the number of sequence (or string) positions where the two sequences differ.
 ExactMatchDistance()  Constructor for class org.cicirello.permutations.distance.ExactMatchDistance

Constructs the distance measurer as specified in the class documentation.
 ExactMatchDistance()  Constructor for class org.cicirello.sequences.distance.ExactMatchDistance

Constructs the distance measurer as specified in the class documentation.
G
 get(int)  Method in class org.cicirello.permutations.Permutation

Retrieves the i'th integer of the permutation.
 get(int, int)  Method in class org.cicirello.permutations.Permutation

Retrieves a range of elements from the permutation.
 get(int, int, int[])  Method in class org.cicirello.permutations.Permutation

Retrieves a range of elements from the permutation.
 getInverse()  Method in class org.cicirello.permutations.Permutation

Computes the inverse of the permutation.
 getInversePermutation()  Method in class org.cicirello.permutations.Permutation

Computes a Permutation that is the inverse of this Permutation.
H
 hashCode()  Method in class org.cicirello.permutations.Permutation

Uses Java's Arrays class's method for generating a hashCode from an array of ints.
 hasNext()  Method in class org.cicirello.permutations.PermutationIterator
I
 InterchangeDistance  Class in org.cicirello.permutations.distance

Interchange Distance:
 InterchangeDistance()  Constructor for class org.cicirello.permutations.distance.InterchangeDistance

Constructs the distance measurer as specified in the class documentation.
 invert()  Method in class org.cicirello.permutations.Permutation

Inverts the Permutation, such that if p1 is the Permutation immediately prior to the call to invert, and if p2 is the Permutation immediately after the call to invert, then p1.get(i) == j iff p2.get(j) == i, for all i, j.
 iterator()  Method in class org.cicirello.permutations.Permutation

Returns an Iterator over all Permutations the length of this Permutation.
J
 JacobiDiagonalization  Class in org.cicirello.math.la

This class uses Jacobi iteration to compute the eigenvalues and eigenvectors of a symmetric matrix, provided as a 2D Java array.
 JacobiDiagonalization(double[][])  Constructor for class org.cicirello.math.la.JacobiDiagonalization

Initializes a Jacobi iteration for finding eigenvalues and eigenvectors of a matrix.
 JacobiDiagonalization(int[][])  Constructor for class org.cicirello.math.la.JacobiDiagonalization

Initializes a Jacobi iteration for finding eigenvalues and eigenvectors of a matrix.
K
 KendallTauDistance  Class in org.cicirello.permutations.distance

Kendall Tau Distance:
 KendallTauDistance()  Constructor for class org.cicirello.permutations.distance.KendallTauDistance

Constructs the distance measurer as specified in the class documentation.
 KendallTauSequenceDistance  Class in org.cicirello.sequences.distance

Kendall Tau Sequence Distance is the minimum number of adjacent swaps necessary to transform one sequence into the other.
 KendallTauSequenceDistance()  Constructor for class org.cicirello.sequences.distance.KendallTauSequenceDistance

The KendallTauDistance class provides two algorithms.
 KendallTauSequenceDistance(boolean)  Constructor for class org.cicirello.sequences.distance.KendallTauSequenceDistance

The KendallTauDistance class provides two algorithms.
L
 LeeDistance  Class in org.cicirello.permutations.distance

Lee Distance:
 LeeDistance()  Constructor for class org.cicirello.permutations.distance.LeeDistance

Constructs the distance measurer as specified in the class documentation.
 length()  Method in class org.cicirello.permutations.Permutation

Retrieves the length of the permutation.
 logGamma(double)  Static method in class org.cicirello.math.MathFunctions

Implementation of the natural log of the absolute value of the gamma function.
 LongestCommonSubsequenceDistance  Class in org.cicirello.sequences.distance

LongestCommonSubsequenceDistance is a form of EditDistance, where the edit operations are limited to deletions and insertions (i.e., no replacements or changes), and where the cost of an edit operation is simply 1.
 LongestCommonSubsequenceDistance()  Constructor for class org.cicirello.sequences.distance.LongestCommonSubsequenceDistance

Constructs a longest common subsequence distance.
M
 MathFunctions  Class in org.cicirello.math

MathFunctions is a class of utility methods that implement various mathematical functions.
 MatrixOps  Class in org.cicirello.math.la

Utility class of basic linear algebra matrix operations, where matrices are represented as 2D Java arrays.
 max(int)  Method in class org.cicirello.permutations.distance.AcyclicEdgeDistance
 max(int)  Method in class org.cicirello.permutations.distance.BlockInterchangeDistance
 max(int)  Method in class org.cicirello.permutations.distance.CyclicEdgeDistance
 max(int)  Method in class org.cicirello.permutations.distance.CyclicRTypeDistance
 max(int)  Method in class org.cicirello.permutations.distance.DeviationDistance
 max(int)  Method in class org.cicirello.permutations.distance.ExactMatchDistance
 max(int)  Method in class org.cicirello.permutations.distance.InterchangeDistance
 max(int)  Method in class org.cicirello.permutations.distance.KendallTauDistance
 max(int)  Method in class org.cicirello.permutations.distance.LeeDistance
 max(int)  Method in interface org.cicirello.permutations.distance.NormalizedPermutationDistanceMeasurer

Computes the maximum possible distance between permutations of a specified length.
 max(int)  Method in class org.cicirello.permutations.distance.ReinsertionDistance
 max(int)  Method in class org.cicirello.permutations.distance.ReversalDistance

Computes the maximum possible distance between permutations of a specified length.
 max(int)  Method in class org.cicirello.permutations.distance.RTypeDistance
 max(int)  Method in class org.cicirello.permutations.distance.ScrambleDistance
 max(int)  Method in class org.cicirello.permutations.distance.SquaredDeviationDistance
 MAX_ITERATIONS  Static variable in class org.cicirello.math.la.JacobiDiagonalization

Default max number of iterations.
 maxf(int)  Method in class org.cicirello.permutations.distance.DeviationDistanceNormalized
 maxf(int)  Method in class org.cicirello.permutations.distance.DeviationDistanceNormalized2005
 maxf(int)  Method in interface org.cicirello.permutations.distance.NormalizedPermutationDistanceMeasurer
 maxf(int)  Method in interface org.cicirello.permutations.distance.NormalizedPermutationDistanceMeasurerDouble

Computes the maximum possible distance between permutations of a specified length.
 mean(double[])  Static method in class org.cicirello.math.stats.Statistics

Computes mean of a dataset.
 mean(int[])  Static method in class org.cicirello.math.stats.Statistics

Computes mean of a dataset.
 Mechanic()  Constructor for class org.cicirello.permutations.Permutation.Mechanic

The default constructor can only be called by subclasses.
N
 next()  Method in class org.cicirello.permutations.PermutationIterator
 nextBiasedInt(int)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random integer in the interval: [0, bound).
 nextBiasedInt(int, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random integer in the interval: [0, bound).
 nextBiasedInt(int, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random integer in the interval: [0, bound).
 nextBinomial(int, double)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom integer from a binomial distribution.
 nextBinomial(int, double, Random)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom integer from a binomial distribution.
 nextBinomial(int, double, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom integer from a binomial distribution.
 nextCauchy(double)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom number from a Cauchy distribution with median 0 and chosen scale parameter.
 nextCauchy(double, double)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom number from a Cauchy distribution.
 nextCauchy(double, double, Random)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom number from a Cauchy distribution.
 nextCauchy(double, double, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom number from a Cauchy distribution.
 nextCauchy(double, Random)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom number from a Cauchy distribution with median 0 and chosen scale parameter.
 nextCauchy(double, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomVariates

Generates a pseudorandom number from a Cauchy distribution with median 0 and chosen scale parameter.
 nextInt(int)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random integer uniformly distributed in the interval: [0, bound).
 nextInt(int, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random integer uniformly distributed in the interval: [0, bound).
 nextInt(int, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random integer uniformly distributed in the interval: [0, bound).
 nextIntPair(int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 2 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntPair(int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 2 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntPair(int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 2 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntTriple(int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntTriple(int, int[], boolean)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntTriple(int, int[], boolean, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntTriple(int, int[], boolean, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntTriple(int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, without replacement, from the set of integers in the interval [0, n).
 nextIntTriple(int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, without replacement, from the set of integers in the interval [0, n).
 nextWindowedIntPair(int, int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 2 integers, i, j, without replacement, from the set of integers in the interval [0, n), such that ij ≤ window.
 nextWindowedIntPair(int, int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 2 integers, i, j, without replacement, from the set of integers in the interval [0, n), such that ij ≤ window.
 nextWindowedIntPair(int, int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 2 integers, i, j, without replacement, from the set of integers in the interval [0, n), such that ij ≤ window.
 nextWindowedIntTriple(int, int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, i, j, k without replacement, from the set of integers in the interval [0, n), such that ij ≤ window, and ik ≤ window, and kj ≤ window.
 nextWindowedIntTriple(int, int, int[], boolean)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, i, j, k without replacement, from the set of integers in the interval [0, n), such that ij ≤ window, and ik ≤ window, and kj ≤ window.
 nextWindowedIntTriple(int, int, int[], boolean, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, i, j, k without replacement, from the set of integers in the interval [0, n), such that ij ≤ window, and ik ≤ window, and kj ≤ window.
 nextWindowedIntTriple(int, int, int[], boolean, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, i, j, k without replacement, from the set of integers in the interval [0, n), such that ij ≤ window, and ik ≤ window, and kj ≤ window.
 nextWindowedIntTriple(int, int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, i, j, k without replacement, from the set of integers in the interval [0, n), such that ij ≤ window, and ik ≤ window, and kj ≤ window.
 nextWindowedIntTriple(int, int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of 3 integers, i, j, k without replacement, from the set of integers in the interval [0, n), such that ij ≤ window, and ik ≤ window, and kj ≤ window.
 normalizedDistance(Permutation, Permutation)  Method in class org.cicirello.permutations.distance.DeviationDistanceNormalized2005

Measures the distance between two permutations, normalized to the interval [0.0, 1.0].
 normalizedDistance(Permutation, Permutation)  Method in interface org.cicirello.permutations.distance.NormalizedPermutationDistanceMeasurer

Measures the distance between two permutations, normalized to the interval [0.0, 1.0].
 normalizedDistance(Permutation, Permutation)  Method in interface org.cicirello.permutations.distance.NormalizedPermutationDistanceMeasurerDouble

Measures the distance between two permutations, normalized to the interval [0.0, 1.0].
 NormalizedPermutationDistanceMeasurer  Interface in org.cicirello.permutations.distance

Implement this interface to define a distance metric for permutations that supports normalizing the distance to the interval [0,1], but where the base distance is an integer value.
 NormalizedPermutationDistanceMeasurerDouble  Interface in org.cicirello.permutations.distance

Implement this interface to define a distance metric for permutations that supports normalizing the distance to the interval [0,1].
O
 org.cicirello.math  package org.cicirello.math

Collection of classes related to a variety of mathematical concepts.
 org.cicirello.math.la  package org.cicirello.math.la

Collection of classes related to linear algebra.
 org.cicirello.math.rand  package org.cicirello.math.rand

Collection of classes related to random number generation.
 org.cicirello.math.stats  package org.cicirello.math.stats

Collection of classes related to statistics.
 org.cicirello.permutations  package org.cicirello.permutations

Collection of classes related to representing and manipulating permutations.
 org.cicirello.permutations.distance  package org.cicirello.permutations.distance

Implementations of a variety of permutation distance measures.
 org.cicirello.sequences  package org.cicirello.sequences

Classes that perform a variety of operations on sequences (such as arrays, etc).
 org.cicirello.sequences.distance  package org.cicirello.sequences.distance

Implementations of distance measures for general sequences of various forms, including Strings, arrays of primitive types, arrays of objects, etc.
 org.cicirello.util  package org.cicirello.util

This package includes classes and interfaces that serve some useful utility purpose.
P
 Permutation  Class in org.cicirello.permutations

Representation of a permutation of the integers from 0 to N1, inclusive.
 Permutation(int)  Constructor for class org.cicirello.permutations.Permutation

Initializes a random permutation of n integers.
 Permutation(int[])  Constructor for class org.cicirello.permutations.Permutation

Initializes a permutation of n integers to be identical to the elements of an array.
 Permutation(int, int)  Constructor for class org.cicirello.permutations.Permutation

Initializes a specific permutation from an integer in mixed radix form representing the chosen permutation.
 Permutation(int, BigInteger)  Constructor for class org.cicirello.permutations.Permutation

Initializes a specific permutation from an integer in mixed radix form representing the chosen permutation.
 Permutation(int, Random)  Constructor for class org.cicirello.permutations.Permutation

Initializes a random permutation of n integers.
 Permutation(int, SplittableRandom)  Constructor for class org.cicirello.permutations.Permutation

Initializes a random permutation of n integers.
 Permutation(Permutation)  Constructor for class org.cicirello.permutations.Permutation

Initializes a permutation of n integers to be identical to a given permutation.
 Permutation(Permutation, int)  Constructor for class org.cicirello.permutations.Permutation

Initializes a permutation of the integers in the interval [0, length) based on their relative order in a permutation p.
 Permutation.Mechanic  Class in org.cicirello.permutations

The Permutation.Mechanic class provides a means of adding applicationspecific operations on Permutations without the need to directly alter the Permutation class.
 PermutationDistanceMeasurer  Interface in org.cicirello.permutations.distance

Implement this interface, PermutationDistanceMeasurer, to define a distance metric for permutations.
 PermutationDistanceMeasurerDouble  Interface in org.cicirello.permutations.distance

Implement this interface, PermutationDistanceMeasurerDouble, to define a distance metric for permutations, where the distance is a floatingpoint value.
 PermutationIterator  Class in org.cicirello.permutations

Iterator over all permutations of a specified length, n, of the integers in the interval [0,n).
 PermutationIterator(int)  Constructor for class org.cicirello.permutations.PermutationIterator

Initializes a PermutationIterator to iterate over all permutations of a given length.
 PermutationIterator(Permutation)  Constructor for class org.cicirello.permutations.PermutationIterator

Initializes a PermutationIterator to iterate over all permutations the same length as a given permutation.
 pow(double, int)  Static method in class org.cicirello.math.MathFunctions

Computes a^{b}, where the exponent b is an integer.
 product(double[][], double[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A * B.
 product(double[][], double[][], double[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A * B.
 product(int[][], int[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A * B.
 product(int[][], int[][], int[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A * B.
R
 RandomIndexer  Class in org.cicirello.math.rand

RandomIndexer is a class of utility methods related to efficiently generating random indexes, and combination of indexes, into arrays.
 RandomVariates  Class in org.cicirello.math.rand

This utility class provides methods for generating random variates from different distributions.
 ReinsertionDistance  Class in org.cicirello.permutations.distance

Reinsertion Distance:
 ReinsertionDistance()  Constructor for class org.cicirello.permutations.distance.ReinsertionDistance

Constructs the distance measurer as specified in the class documentation.
 removeAndInsert(int, int)  Method in class org.cicirello.permutations.Permutation

Removes integer from one position and then inserts it into a a new position shifting the rest of the permutation as necessary.
 removeAndInsert(int, int, int)  Method in class org.cicirello.permutations.Permutation

Removes a subarray of integers from one position and then inserts it into a a new position shifting the rest of the permutation as necessary.
 ReversalDistance  Class in org.cicirello.permutations.distance

Reversal Distance:
 ReversalDistance()  Constructor for class org.cicirello.permutations.distance.ReversalDistance

Construct the distance measure.
 ReversalDistance(int)  Constructor for class org.cicirello.permutations.distance.ReversalDistance

Defines a distance measure for permutations of length n.
 ReversalIndependentDistance  Class in org.cicirello.permutations.distance

This class implements the concept of a reversal independent distance measure.
 ReversalIndependentDistance(PermutationDistanceMeasurer)  Constructor for class org.cicirello.permutations.distance.ReversalIndependentDistance

Constructs a distance measure for measuring distance with reversal independence, such that distance = min { distance(p1,p2), distance(p1,reverse(p2)) }
 ReversalIndependentDistanceDouble  Class in org.cicirello.permutations.distance

This class implements the concept of a reversal independent distance measure.
 ReversalIndependentDistanceDouble(PermutationDistanceMeasurerDouble)  Constructor for class org.cicirello.permutations.distance.ReversalIndependentDistanceDouble

Constructs a distance measure for measuring distance with reversal independence, such that distance = min { distance(p1,p2), distance(p1,reverse(p2)) }
 reverse()  Method in class org.cicirello.permutations.Permutation

Reverses the order of the elements in the permutation.
 reverse(int, int)  Method in class org.cicirello.permutations.Permutation

Reverses the order of the elements of a subrange of the permutation.
 rotate(int)  Method in class org.cicirello.permutations.Permutation

Circular rotation of permutation (to the left).
 RTypeDistance  Class in org.cicirello.permutations.distance

RType Distance:
 RTypeDistance()  Constructor for class org.cicirello.permutations.distance.RTypeDistance

Constructs the distance measurer as specified in the class documentation.
S
 sample(byte[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(byte[], int, byte[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sample(char[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(char[], int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sample(double[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(double[], int, double[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sample(float[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(float[], int, float[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sample(int[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(int[], int, int[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sample(int, double)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample, without replacement, from the set of integers in the interval [0, n).
 sample(int, double, Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample, without replacement, from the set of integers in the interval [0, n).
 sample(int, double, SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample, without replacement, from the set of integers in the interval [0, n).
 sample(int, int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sample(int, int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sample(int, int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sample(long[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(long[], int, long[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sample(short[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(short[], int, short[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sample(String, double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given String with a specified probability of a character's inclusion in the sample.
 sample(String, int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k chars, without replacement, from a given source String.
 sample(T[], double)  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample, without replacement, from a given source array with a specified probability of an element's inclusion in the sample.
 sample(T[], int, T[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(byte[], int, byte[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(char[], int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(double[], int, double[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(float[], int, float[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(int[], int, int[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(int, int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sampleInsertion(int, int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sampleInsertion(int, int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sampleInsertion(long[], int, long[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(short[], int, short[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleInsertion(String, int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k chars, without replacement, from a given source String.
 sampleInsertion(T[], int, T[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(byte[], int, byte[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(char[], int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(double[], int, double[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(float[], int, float[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(int[], int, int[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(int, int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 samplePool(int, int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 samplePool(int, int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 samplePool(long[], int, long[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(short[], int, short[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 samplePool(String, int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k chars, without replacement, from a given source String.
 samplePool(T[], int, T[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(byte[], int, byte[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(char[], int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(double[], int, double[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(float[], int, float[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(int[], int, int[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(int, int, int[])  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sampleReservoir(int, int, int[], Random)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sampleReservoir(int, int, int[], SplittableRandom)  Static method in class org.cicirello.math.rand.RandomIndexer

Generates a random sample of k integers, without replacement, from the set of integers in the interval [0, n).
 sampleReservoir(long[], int, long[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(short[], int, short[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 sampleReservoir(String, int, char[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k chars, without replacement, from a given source String.
 sampleReservoir(T[], int, T[])  Static method in class org.cicirello.sequences.SequenceSampler

Generates a random sample of k elements, without replacement, from a given source array.
 scramble()  Method in class org.cicirello.permutations.Permutation

Randomly shuffles the permutation.
 scramble(boolean)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles the permutation.
 scramble(int[])  Method in class org.cicirello.permutations.Permutation

Randomly shuffles a noncontiguous set of permutation elements.
 scramble(int[], Random)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles a noncontiguous set of permutation elements.
 scramble(int[], SplittableRandom)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles a noncontiguous set of permutation elements.
 scramble(int, int)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles a segment.
 scramble(int, int, Random)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles a segment.
 scramble(int, int, SplittableRandom)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles a segment.
 scramble(Random)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles the permutation.
 scramble(Random, boolean)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles the permutation.
 scramble(SplittableRandom)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles the permutation.
 scramble(SplittableRandom, boolean)  Method in class org.cicirello.permutations.Permutation

Randomly shuffles the permutation.
 ScrambleDistance  Class in org.cicirello.permutations.distance

Scramble Distance:
 ScrambleDistance()  Constructor for class org.cicirello.permutations.distance.ScrambleDistance

Constructs the distance measurer as specified in the class documentation.
 SequenceDistanceMeasurer  Interface in org.cicirello.sequences.distance

Implement this interface, SequenceDistanceMeasurer, to define a distance metric for sequences.
 SequenceDistanceMeasurerDouble  Interface in org.cicirello.sequences.distance

Implement this interface, SequenceDistanceMeasurerDouble, to define a distance metric for sequences.
 SequenceSampler  Class in org.cicirello.sequences

ArraySampler is a class of utility methods related to efficiently generating random samples of array elements, without replacement.
 set(int[])  Method in class org.cicirello.permutations.Permutation

Changes the state of this permutation to be identical to the elements of an array.
 set(Permutation, int[])  Method in class org.cicirello.permutations.Permutation.Mechanic

Changes the state of the Permutation according to the contents of an array of int values.
 set(Permutation, int[], int, int, int)  Method in class org.cicirello.permutations.Permutation.Mechanic

Changes a range of permutation elements.
 set(Permutation, int, int)  Method in class org.cicirello.permutations.Permutation.Mechanic

Changes the integer in one specific location of a Permutation.
 set(Permutation, int, int[])  Method in class org.cicirello.permutations.Permutation.Mechanic

Changes a range of permutation elements.
 SquaredDeviationDistance  Class in org.cicirello.permutations.distance

Squared Deviation Distance:
 SquaredDeviationDistance()  Constructor for class org.cicirello.permutations.distance.SquaredDeviationDistance

Constructs the distance measurer as specified in the class documentation.
 Statistics  Class in org.cicirello.math.stats

Utility class of basic statistics.
 sum(double[][], double[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A + B.
 sum(double[][], double[][], double[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A + B.
 sum(int[][], int[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A + B.
 sum(int[][], int[][], int[][])  Static method in class org.cicirello.math.la.MatrixOps

Computes C = A + B.
 swap(int, int)  Method in class org.cicirello.permutations.Permutation

Swaps 2 integers in the permutation.
 swapBlocks(int, int, int, int)  Method in class org.cicirello.permutations.Permutation

Swaps 2 nonoverlapping blocks, where a block is a subsequence.
T
 toArray()  Method in class org.cicirello.permutations.Permutation

Generates an array of int values from the interval [0, n) in the same order that they occur in this Permutation.
 toArray(int[])  Method in class org.cicirello.permutations.Permutation

Generates an array of int values from the interval [0, n) in the same order that they occur in this Permutation.
 toBigInteger()  Method in class org.cicirello.permutations.Permutation

Generates a unique integer representing the permutation.
 toInteger()  Method in class org.cicirello.permutations.Permutation

Generates a unique integer representing the permutation.
 toString()  Method in class org.cicirello.permutations.Permutation

Creates a String representing the permutation.
 transposeSquareMatrixInline(double[][])  Static method in class org.cicirello.math.la.MatrixOps

Transpose a square matrix inline.
 transposeSquareMatrixInline(int[][])  Static method in class org.cicirello.math.la.MatrixOps

Transpose a square matrix inline.
 tTestUnequalVariances(double[], double[])  Static method in class org.cicirello.math.stats.Statistics

Welch's ttest, also known as ttest with unequal variances.
 tTestUnequalVariances(int[], int[])  Static method in class org.cicirello.math.stats.Statistics

Welch's ttest, also known as ttest with unequal variances.
 tTestWelch(double[], double[])  Static method in class org.cicirello.math.stats.Statistics

Welch's ttest, also known as ttest with unequal variances.
 tTestWelch(int[], int[])  Static method in class org.cicirello.math.stats.Statistics

Welch's ttest, also known as ttest with unequal variances.
V
 variance(double[])  Static method in class org.cicirello.math.stats.Statistics

Computes variance of a population.
 variance(int[])  Static method in class org.cicirello.math.stats.Statistics

Computes variance of a population.
 varianceSample(double[])  Static method in class org.cicirello.math.stats.Statistics

Computes variance of a sample.
 varianceSample(int[])  Static method in class org.cicirello.math.stats.Statistics

Computes variance of a sample.
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